Microsoft Intune has become the primary mobile device and application management solution for modern Windows environments. This guide covers how to get started with Intune in 2026 — enrolling devices, deploying applications and configuring compliance policies.
What is Microsoft Intune?
Microsoft Intune is a cloud-based endpoint management solution that allows you to manage Windows, iOS, Android and macOS devices from a single console. It integrates with Azure Active Directory (Entra ID) and Microsoft 365 and is the cloud-native replacement for on-premises SCCM for many organisations — though many use both together in a co-management configuration.
Intune Licensing
Intune is included in Microsoft 365 Business Premium, Microsoft 365 E3 and E5, and Enterprise Mobility + Security (EMS) E3 and E5. It is also available as a standalone licence. Check your Microsoft 365 admin centre to confirm whether Intune is included in your existing subscription.
Enrol a Windows Device into Intune
Method 1 — Auto-enrolment via Azure AD Join
- Go to Settings → Accounts → Access work or school → Connect
- Enter the user’s work email address
- Sign in with their Microsoft 365 credentials
- Select Join this device to Azure Active Directory
- The device will join Azure AD and automatically enrol in Intune
Method 2 — Windows Autopilot (New Devices)
Windows Autopilot allows new devices to be configured and enrolled automatically when a user signs in for the first time — no IT imaging required. The device ships directly from the manufacturer or reseller, the user powers it on, signs in with their work account and Autopilot configures everything automatically.
Deploy an Application via Intune
- In the Intune admin centre go to Apps → Windows → Add
- Select the app type — Microsoft 365 Apps for Office, Windows app (Win32) for MSI/EXE packages, or Microsoft Store app
- For Win32 apps, package the installer using the Microsoft Win32 Content Prep Tool to create an .intunewin file
- Upload the .intunewin file and configure install and uninstall commands
- Set detection rules — registry key, file or MSI product code
- Assign to user or device groups
Create a Compliance Policy
- In the Intune admin centre go to Devices → Compliance policies → Create policy
- Select Windows 10 and later
- Configure compliance settings — minimum OS version, BitLocker required, antivirus required, firewall required
- Set actions for non-compliance — mark as non-compliant after grace period, send email notification, block access
- Assign to device groups
Useful Intune PowerShell Commands
# Install Microsoft Graph PowerShell module for Intune management
Install-Module -Name Microsoft.Graph -Scope CurrentUser
# Connect to Microsoft Graph
Connect-MgGraph -Scopes "DeviceManagementManagedDevices.ReadWrite.All"
# Get all Intune managed devices
Get-MgDeviceManagementManagedDevice | Select-Object DeviceName, OperatingSystem, ComplianceState, LastSyncDateTime
# Get non-compliant devices
Get-MgDeviceManagementManagedDevice -Filter "complianceState eq 'noncompliant'" | Select-Object DeviceName, UserPrincipalName
Frequently Asked Questions
What is the difference between Intune and SCCM?
SCCM (Configuration Manager) is an on-premises solution best for complex deployment scenarios, OSD, and managing machines that are not internet-connected. Intune is cloud-based and ideal for managing remote workers, BYOD devices and Azure AD-joined machines. Co-management allows you to use both simultaneously, gradually moving workloads from SCCM to Intune.
Does Intune require Azure AD Premium?
Basic Intune functionality works with free Azure AD. Azure AD Premium P1 (included in Microsoft 365 E3) adds Conditional Access, which is strongly recommended as it allows you to block access to company resources from non-compliant or unmanaged devices. Azure AD Premium P2 adds Identity Protection and Privileged Identity Management.
Can Intune manage domain-joined machines?
Yes — hybrid Azure AD-joined machines are domain-joined AND registered in Azure AD, allowing them to be managed by both SCCM and Intune simultaneously via co-management. Pure Azure AD-joined machines (not domain-joined) are managed by Intune only.
How long does it take for Intune policies to apply to devices?
Intune devices check in approximately every 8 hours for policy updates. You can force an immediate check-in from the Intune admin centre by selecting the device and clicking Sync, or on the device via Settings → Accounts → Access work or school → Info → Sync.
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